Mirrored parts not showing, names changing

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I am working on my first real project, it is a work bench assembled with tressel nuts and bolts. I have assembled half of the table base using Rigid Joints. I completed the second half of the table base using 2 Mirror Components commands. On the first command all of the selected components were created. On the second mirror command some of the components selected did not get mirrored. I can see them in the preview but they are not in the created state.
My second issue is when a component is mirrored its part name changes, the extension of (Mirror) is added to the part name. This becomes an issue if I want to change the part name, and when I build a BOM. Because the name is different a change to the original is not propagated to the (mirror)ed part. In BOMs the parts are list and counted as separate parts.
Is there a way to fix these two issues with mirrored components?