Jon was kind enough to share his model, and let me post the results, in case others can benefit.
I was able to modify these holes. Doing so revealed a few workflow weaknesses in Fusion 
First, I had to find which sketch to modify!
Even before that, I had to turn off some components, to be able to see the holes:

Then, I needed to find out what feature those holes were. I used Select Other (hold down the left mouse button for a second, the Select Other UI will come up, and click on the "Parents" tab):

Select the Extrude feature. This is now highlighted in the timeline. Oddly, this feature has warnings, but I don't think they relate to the sketch at all:

Then, I had to edit the feature to find the sketch. This is one thing that I think needs to be fixed. We should have an "Edit Sketch" item on a feature. Instead, you have to edit the feature, and use the same browser trick to find the sketch:

so, now I know that Sketch34 is the one I am interested in. But, unfortunately (this is another thing that needs to be changed), you have to first turn on the visibility of the sketch folder:

now, finally, we can edit the sketch. This is pretty straightforward. I added a vertical construction line between these circles, to keep them aligned:

Then, just add a dimension between the construction line and the right side:

and exit the sketch. The holes are now repositioned:

Finally, the warnings on this extrude bother me. I think that's a bug. But, to fix it, I just changed the type of the extrude to "distance":

I apologize for the length of the response, and if any of it is overly obvious.
The 3 items I was able to distill from this exercise:
1. there is a bug with that Extrude - I'm not sure why it is showing warnings.
2. Fusion needs a way to select a feature and edit the sketch for it, without having to search around for that sketch manually
3. Edit sketch already makes the sketch you are editing visible, but does not check that the sketch container is visible. In this case, I was able to edit the sketch, but did not see anything, because the folder was set to "off".
There are probably more...
Jeff
Jeff Strater
Engineering Director