How can I force a body to update after a sketch is changed?

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Occasionally, I encounter bodies that don't reflect the underlying sketches extruded to create them. This doesn't happen often but when it does, it occurs after I modify the sketch. Unfortunately, except for the scenario outlined below, I don't have additional details on how to recreate the issue. To fix the issue I delete the body and extrude the sketch. Is this really the best approach?
Here's one scenario where I recall this happening a few times. Imagine a sketch comprised of a rectangle (1/2" tall x 3" long) with a 1/4" hole hole placed 1/2" from each end. Save the sketch and extrude the shape to 1/4" thickness and perform other work on other components, joints,etc. Hours or days later, I modified the sketch by a) increasing the overall length to 6", and b) placing 1/4" diameter holes every 1/2" along the length. The body might update to reflect SOME of the new holes but not all. However when the sketch appears as the cursor hovers over it, the sketch appears correctly including all the holes.
Is there a way I can manually force a body or entire file to update / recalculate? Saving and re-opening the file doesn't fix the issue.