I don't think you understood much of what I said.
Yes, Onshape created a solid modeled fillet in the area Fusion has a problem with. Fusion creates a fillet at the bottom that looks OK to you.
Neither of these fillets look acceptable to most product designers as most product designers - at least in the field of vehicle design and higher end consumer product design - work with surfacing software. To a degree you can do this as well with Fusion 360.
The difference between Onshape and Fusion 360 is the geometric modeling kernel. In Case of Fusion 360 thats a fork of the ACIS kernel and in case of Onshape it is a Parasolid kernel. Both have different strengths. In this case that manifests itself in Fusion 360 not creating a fillet that Onshape creates.
Be that as it may, you either create your design in Onshape, or you have to learn a different technique if you want to continue with Fusion 360. In my opinion, that different technique generates the better design, regardless of the software you are working with.