In order to achieve this you have to modify the architecture model's "project base point" or "survey base point" or both, depending on which one you will use in the project. In the architect's model, while selecting the "project base point" (blue crossed-round object shown in below screenshot ) change all the properties to match what you have in the structure model. Make sure both base point symbols are turned on from the VG Overrides - Model Categories, under "Site", to show these in the model. After doing so, zoom extent if you're not seeing it.
Distance of the architecture model to the project base point should be the same as the structure. Take 1 reference wall or grid, like the ones nearest to the project base point, measure it and match with the distance of your structure model, if they are not matching then move the project base point as required, make sure you unpin the base point (paper clip symbol with slanted line, you can pin & unpin it by selecting & clicking to it) before moving it. Best thing to do this is in 3D view and set it to top view for moving horizontally.
You have to do the same vertically, make sure your floor levels are matching with the elevation settings of the structure model. You take 1 floor or level as a reference and move vertically to match the settings.
After changing the settings don't forget to lock or pin back the project/survey base points, save it and close. You architecture model is now ready to be linked to your structure model (or vise versa) using either "shared coordinates" or "origin to origin".
Before doing all of the above, make sure you have the rights to change the architect's model coordinates, otherwise, you have to discuss and agree with them to set the model correctly for you.

Ryan Ortega
MEP BIM Lead
Aurecon Group - Dubai, UAE
www.ryanortega-bimportfolio.com