If Recap mobile had a manual visual alignment option (possibly to replace the 'map' mode of manual registration which I have never had any success with) that modeled Cyclone's I feel like the manual registration process would be faster/easier/more successful. If the user could shift and rotate one cloud onto the other to provide an approximate alignment of the clouds many of the challenges of manual registration would be solved.
In addition, there should be an option to forgo an automatic cloud to cloud attempt at registration once the user has approximately positioned the clouds in this way. This would be useful where Recap is having difficulty finding the correct cloud to cloud solution; the user could just freeze each cloud in it's approximate position for later refinement in the office while carrying on with the field work.