I'm having the same issue. It is a simple part that I'm cutting out of cardboard for a "Cardboard Classic" as part of our end of season here at the mountain. Craft can only be made of cardboard and duct tape so it is nothing complex. I'm just learning 360 and we do this for a group of 5th graders as a full blown engineering project so I combined the two together so we could all learn something. This part is part of the neck of a coke bottle and the inside radius is off by a lot. I saved the piece off as a solo part and repeated the CAM and followed the contour exactly as expected. Not sure if my work flow caused a problem (just learning 360 so there is a lot of undo involved) or something else but it seems to be the same problem the OP is talking about so probably not an isolated case.
BTW.... I didn't really notice the toolpath being off until I read this. My real issue that I was trying to find an answer to was that the tool path was very jerky as it hit all the points along the curve. I've played with tolerances and made it better but not exactly smooth. Setup is running Mach3 (mach3 post processor) with gecko 540 driving nema 23 motors and CV on and all options off. Other parts seem to cut very smooth but not this one:(
I've tried to add a screencast that shows the issue. Still new at all of this so hopefully it works. Gotta say 360 has been nothing but impressive so far.