@jameswyatthopkins
By all means go ahead and alter the PP, however I have to disagree with you and agree with @seth.madore regarding the correct sequence for a tool change in Mach3, or even Mach2 and Mach4 they have always been T** M6. if your version of Mach3 won`t accept that command then I think you need to maybe change the version of Mach3 you are using, some versions are notoriously unstable and "buggy", what version are you using? Is it the last "stable" version??
Over the years I have built/retro-fitted/modified more than a dozen CNC Mills and Lathes and 1 Router and 1 Laser using various Mach3/4 setups, some for myself and some for others and I have never seen any Post Processor that I have used with several different CadCAM softwares, (FeatureCAM, BobCAD-CAM, MasterCAM) in every one of them the Post Processor for Mach3 has always output Tool first and then tool change command M6 (or M06). They are all very mature CadCAM softwares, years and years ahead of Fusion 360, a good guide to how mature and stable a CadCAM software is to go to the Forums (CNC Zone, their Forums etc, etc) and the ones that have very little posting are the ones that work well and no body needs to Post!!
Fusion 360 is still quite young (Relatively speaking) so we constantly have things that did work OK getting "broken" because the developers have done something somewhere else that has affected it!!
Mach3 is actually Fanuc based and that is the way it has been done for many, many years and it does work!
I am not having a go at you, but to be saying that the Fusion 360 Mach3 PP is wrong is actually wrong, it may not be perfect but there again nothing about Mach3 is or ever will be, have you considered moving to Mach4 ? I have used it on a small 3 axis VMC and it does work way better than Mach3 🙂 🙂 🙂
Regards
Rob