I think the suggestion by @Steinwerks is probably the easiest workaround for your problem right now.
One other workaround that springs to mind is to adjust the diameter of the holes in groups so that you have groups of holes with diameter 0.06201, 0.06202, 0.06203 etc. Select Same Diameter by default compares the diameter to 1/100000th of the tool diameter. You can, by the way, adjust this if you edit the operation with Compare and Edit.
Both options are of course workarounds, and we do have two enhancements on our backlog that I think would solve help a lot:
Ordering of holes by pattern (linear, zig-zag, circular etc.).
"Machining Boundary" support for Drill. This is essentially like a window selection, but driven by a face or sketch which gives you a way to associatively limit the area where you want to "select same diameter" holes.
Both enhancements are unfortunately not at the top of our list at the moment, but your request of course makes us re-think the current priority of these.
/Mark