Thank you very much for your input.
To answer some questions:
@n8bot, the surfaces are simple planar / cylindrical (such as pockets, shafts, etc).
@TrippyLighting, thank you for R.U.L.E. #1. We have been using it.
Here is a very simplified example of my problem:
http://a360.co/2vRoEvK
Our finished product includes a large tooling plate with many subassemblies that must align correctly, some move on rails.
The model shown here is a simplified representation of one such subassembly. It shows three parts which must fit together with tight fit, meaning they can be assembled / disassembled by hand but with negligible clearance. If we add type 3 hard anodizing which builds up each surface (0.002"), these parts will not fit. So this represents our exact issue.
We like the idea of modeling to final dimensions and using a parameter to apply offset at the end, before going to CAM, as suggested here. But, being newbies to Fusion 360, we need a little help. 🙂
Once we create a parameter, how do we apply it so that the surfaces will move in the correct directions, without causing problems such as circular references, misalignment, and errors related to loss of geometry used in calculations. (Being new, we've run into those issues more than once.)