Where to begin... but Ill keep it short. 🙂
When importing, give me the ability to move and align the mesh easily! Many scanning softwares does not give you a reasonable orientation to any coordinate system.
* Allow me to choose 3 points on the mesh to create a (parented) plane to be aligned to another plane/face, maybe let me name and keep the plane(s) also.
* This applies to lines and points as well, give me easy to use reference points that can be used for transformations and alignment with other geometry.
* Allow me to place a pivot point anywhere ON the mesh (or suggested reference/construction elements mentioned above) when rotating it, not only in the center of the mesh box.
Calibrate/scale mesh: Just like with a canvas, select two points and a known number, scale to fit. Not always exported with correct units. mm/cm/inches etc.
Allow me to do a section cut that isn't a dead poly-line but a useful Bezier-curve from the start, many scanners are not accurate below 0.1 mm anyways so it does not need to fit more perfectly than that. Yes, default could have curve(s) parented to the mesh.
Later this could maybe perhaps hopefully lead to useful reverse engineering features 😉 Something most other softwares currently suck at, take the lead on this one!
when section cutting, have a cross hatch pattern like on bodies, seeing the inside/backface culling is confusing.
Remeshing tools in general, use whatever you can from Meshmixer, works OK.
Start with this, this should make F360 much better than many other CAD software.