Thanks so much George,
I changed the 5V inner layer to 3 to 15 and renamed it, and re-created the polygon; however I don't know how to delete the old layer (#3).
Turning off the TopRouter seemed to help for sure.
I think I've made some progress, however I feel like there are so many variables I'm not sure what to try. I've started by just routing the top and bottom layers which works - I get to 100%; however when I start the autorouter I get a warning:
Layer 2 ($+5V), 3 (L3), 15 (DGND) used but not enabled!
Objects therein may collide with vias placed by the autorouter. Do you wish to run the autorouter anyway?"
Is this an issue?
I have tried doing the routing in passes, starting with the signal layers, now when I try routing the GND and 5V planes it gets to 100%. Before I switched to layers 1,2,15,16 I wasn't seeing any thermals from the pads to the pours - now that I switched them it seems to be working!
In the manual it says to select the largest possible line width for the polygons - what is a reasonable value?
Thanks again for the help - I think I'm getting closer!