Hey @claudio.ray,
I hope you're doing well. So the procedure for rotate is pretty simple.
1) Form selection
2) Click on the ROTATE command, in the dialog that pops up enter the angle you want the press enter
3) Now hold ctrl+ right click on a member of the selection. The entire selection will rotate by that amount.
Wherever you do the right click that becomes the reference point for the selection. Once the group is rotated then you can use the move to precisely locate it.
So if you export it to EAGLE the definition should be understood. With that said, I would like to inquire what you have such a complex via stackup. Making a board like this would be EXTREMELY expensive. If you need it, you need it, but I want to make sure you are not under the misconception that you need to have a via config between every possible combination of layers. For example a via that goes from 1-16 can connect all layers, it will isolate from any layers it's not supposed to connect to. Generally, you only really need blind and buried vias for tiny dense layouts. I recognize you have a dense layout but you may be able to do it with fewer via configurations.
For Fusion, we are currently using Electronic Designs sort of like Designblocks. If you use that workflow you have 1/16 of the board as it's own electronic design and then you place it 16 times to get your final configuration. Currently Designblocks within fusion are consumable but they are not editable. We are working on a better replacement for them.
Let me know if there's anything else I can do for you.
Best Regards,

Jorge Garcia
Product Support Specialist for Fusion 360 and EAGLE
Kudos are much appreciated if the information I have shared is helpful to you and/or others.
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