Do you think this misalignment was because of ReCap?
You should be able to move the scans in Navisworsk or Infraworks manually.
Will that work?
is there a gap between the scan data when you say "not overlapping"?
Or have identical points different coordinates in both scans?
If it's only a gap between scans you should be able to start a Recap project with the first LAS file. Then add (import) the second LAS file. It will be placed at the correct coordinates.
Search the Autodesk Knowledge Network for more content.
New: Get an Activation Code
Mac OS X 10.12 Support
Windows 10 Support
Autodesk Online Store Help
Serial Numbers & Product Keys
Installation & Licensing
Online Activation & Registration
Network License Administration