Hi Ben,
honestly i use Moldflow 2014 version, but i think the procedure to insert a sequential gate is the same:
-if you don't have the hot runner system:
insert the first gate (yellow cone) in your mesh
in the position where you want to create the sequential gate create a line (10mm is enough). You can use commands in the geometry menu (you can select a node, make a new node using the command nodes, create nodes by offset)
connect the new node and the selected node of your mesh with a line.
Right click on the properties of the line, add the property of hot gate. Then right click on the line, set mesh density of 3.3mm (so 10mm/3.3 you will have 3 elements in the hot gate).
Click on mesh now, so you will have beams where you have the second gate.
-(from this point to the end the procedure is the same, both with your "little" hot runner system created above, or with a full hot runner system)
Then click of one of the three beam elements and open properties (be sure you are not modifiyng the properties of all the three elements), click on the second tab valve gate controller, default controller, modify, time, modify, initial state "close" and below insert when do you want to open the second gate.
Hope this helps.
Regards,
Matteo