Inventor FEA results not matching

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So I am having problems with getting my stress analysis results to match together. I get that the same simulations (even if they are copied) may yield different stress results from mesh and convergence and all that.
My problem is that when I run a simulation in a part (.ipt) file a few times and average the fairly close results, and then place that part inside an assembly (.iam) by itself and run the same setup, I get a pretty different result. My part is a pretty simple rod fixed constrained at one and and a force on the other. The values for stress in the part file are ranging from 103-122 ksi, and the stress of the part in an assembly by itself are around 71-76 ksi.
If anybody has any idea why this is happening, some insight would me much appreciated.
Thanks.