I posted this problem on the Fusion CAM forum but haven't been able to find an answer yet so I'll try here as well.
This part I've uploaded is a scaled down version of what I'm trying to do.
I setup a drill operation, selected one hole. setup tool orientation. Set it in a folder and set the wcs offset to 1
I setup the next hole operation, setup tool orientation (which rotates 90). set in folder and set offset to 2.
I repeat this two more times to make four total holes.
Each tool orientation does one hole.
In my example it is clearly not needed. But it's a test. My actual need is a 30" dia disk, that has 806 holes in it at .041 dia.
My machine cannot reach them all, so I'm trying to group them, change tool orientation to trigger C-Axis to rotate, and repeat.
Any thoughts to why this doesn't work? I use tool orientation to tip and rotate parts all the time. But why in this case is it not working?
I've included to test file, and an image of the first hole setup.

Here is what my post produces. Looking at it again, it would appear the post is ignoring tool orientation all together. It's still putting in the fixture numbers, but bypasses the change in orientation.
%
O1001
N1 G49 G40 G80
N2 G00 G91 G28 Z0.
(STEP1 - DRILL)
N3 T1 M06 (0.187)
N4 G54
N5 G00 G90 A0. C0.
N6 G00 G90 S1123 M03
N7 G00 G90 X2.5 Y0.
N8 G43 H01 Z0.1
N9 M08
N10 G98 G83 X2.5 Y0. R0.1 Z-0.12 Q0.0468 F1.12
N11 G80
N12 G00 Z0.1
N13 G00 G91 G28 Z0.
(STEP2 - DRILL)
N14 G55
N15 G00 G90 X0. Y-2.5
N16 G43 H01 Z0.1
N17 G83 X0. Y-2.5 R0.1 Z-0.12 Q0.0468 F1.12
N18 G80
N19 G00 Z0.1
N20 G00 G91 G28 Z0.
(STEP3 - DRILL)
N21 G56
N22 G00 G90 X-2.5 Y0.
N23 G43 H01 Z0.1
N24 G83 X-2.5 Y0. R0.1 Z-0.12 Q0.0468 F1.12
N25 G80
N26 G00 Z0.1
N27 G00 G91 G28 Z0.
(STEP4 - DRILL)
N28 G57
N29 G00 G90 X0. Y2.5
N30 G43 H01 Z0.1
N31 G83 X0. Y2.5 R0.1 Z-0.12 Q0.0468 F1.12
N32 G80
N33 G00 Z0.1
N34 M09
N35 G00 G28 G91 Z0.
N36 M05
N37 G00 G28 Y0.
N38 M30
%
I've included my post in hopes that maybe it's just setup wrong.