This suggestion has benefits in several areas.
Allowing users to specify an alternate model for shaft + holder avoidance would allow the inclusion of fixtures and clamps to be checked for collision and automatically trimmed/tilted/kept away from without having to include them in toolpath generation only to use containment methods to exclude them from toolpath calculation.
It also would allow advanced users to specify a surface that is otherwise occluded by the model itself for toolpath generation, while still using the model for avoidance purposes. This is mainly useful for multi-axis tilting.