Good question.
When I first mounted the stock on the table it had no holes in it whatsoever. I made all the holes in the model. Once i had zeroed everything, my first operation was to drill the four lower holes through the stock and into the scrap table so I cut put an alignment pin in the holes when I moved them.
I then ran the lower section of the flower....my parameters were a little off and it took a while but it worked well.
Then I moved the stock by putting 2 alignment pins in the first two holes (1 left and 1 right side). I then placed the stock on those pins by aligning the 2nd holes......then I drilled the third set of holes and moved the stock again.
Then I ran the stem of the flower and found it was off about 1/16 or so. This surprised me since the CNC had drilled all my alignment holes in the correct places.
Then I ran the rest of the top half of the flower.....all worked well except the left/right alignment was slightly off.
As I write this I am wondering if it would work better if I did the following:
1) Mount a new scrap table top with no holes etc in it.
2) Have the CNC square the table etc.
3) Mount the stock as close to square with the table by lining up the long edge.
4) Have CNC drill holes along the left edge that go all the way through the stock and 0.3 into the scrap table. These are guaranteed to line up as they were made with a single operation. I would make them at these locations:
(0.5, 1)
(0.5, 9)
(0.5, 17)
7) Leaving the stock in place, have CNC mill the bottom half of the flower.
8) Dismount the stock. Move it down 8" so that the hole that was originally at (0.5, 9) is now at (0.5,1) and the hole originally at (0.5, 17) is now at (0.5, 9)
9) Drill a new hole through the stock at (0.5,17) but don't go into the scrap table.....theoretically this hole should line up with the one previously drilled in the same location.
10) Dismount the stock, move it down another 8" so that the hole originally at (0.5,17) is now at (0.5, 1) and the newest hole is at (0.5, 8).
In theory this should keep the stock perfectly (or very nearly perfectly) aligned but shifted by 16"
I should mention that the stock is just poplar wood so easy to sand the surface a little if needed.
11) Mill the top half of the flower stem, but only .002 deep to see how it aligned with the previous piece. If it is good, mill it again full depth. If not, then I have to adjust the origin somehow.. I can think of two ways.
1) As suggested in another comment, go back to CAM and move the origin....this is a pain because it is hard to precisely move the origin in Fusion 360.
2) Move the CNC back to 0,0 and manually move it slightly left/right, forward/backward to adjust for the mis alignment. Then make this new position = 0,0
Either way, rerun the flower stem at a depth of 0.004 or something small.....see if It lines up better now. If so, mill full depth, if not so it again.
Do you see a problem with this process or a better way to do it?
Thanks
Paul