Hey ovisopa,
I know it's been a while since you posed this question, but I just came across it as I have been running into the same issues. I have been dealing with them in acceptable ways which I'll describe in a bit, but I am looking for better ways to do this.
A couple of different things I have tried successfully have been to set the rest machining tool diameter bigger than the actual tool used. For instance, if you machined with a 6mm end mill for the 2D adaptive, set the rest machining diameter to 7.5mm. With a bit of fine tuning you can reduce or increase the diameter of the tool and get it as close to the previous stock as possible, but check that all pockets are being cleared by the tool, don't rely on just one.
The other thing to do in conjunction with this is to increase/decrease your linear lead in distance, under linking, leads and transitions, for fine adjustment. But make sure that the lead in speed is not too high if the end mill is going to be cutting while leading in, or it will break your end mill. Once again, check your simulation to make sure the tool will not lead into the stock at a lead in speed while it's meant to be cutting.
Another thing I am using is the multiple depths option located under passes for the 2D contour. This allows for multiple passes at different heights, including an option to do a finishing pass at the final depth. The great thing about this is that it reduces your load on the tool and it is less likely to break it.
One final thing to look at are the feed optimization options under the passes tab, all the way down. Just like John Saunders (NYC CNC on youtube) said in one of his videos, this option doesn't really say what it does in the title, BUT, it is really handy. What it allows you to do is to slow the feed speed down when coming up to a corner, which reduces the load on the end mill. You can set how slow you want the tool to be fed, as well as what type of corners to slow down in and how far away from a corner to start slowing down. I have used this option with great success.
When you look on your simulations, you will see that in a corner the step over of your tool is much larger that the one you have set under the multiple step over options in the passes tab. This is because the step over distances are calculated parallel to one another by the looks of it, which does not take into consideration the corner. Therefore the tool become heavily loaded up and breaks.
Lastly, this is just my experience so far as I am a full time knife maker in New Zealand and I have had no formal training in Fusion 360 or any CNC systems> SO!! take the above as thought provoking information, rather than a guide and go from there.
Hope this helps and if you have any questions let me know. Maybe I didn't explain something clearly.
OH! I almost forgot to mention!! after the initial 2D adaptive clearing, I use a 2D contour, with the options mentioned above, as a roughing operation. Therefore I leave a bit of stock for a final finishing 2D contour run.