Hi @RCBakerBorn,
I hope this message finds you well. That is unusual, usually board houses will plate all of the drills unless otherwise specified.
Gerbers and drill files don't specify this, so generally you would just let your board house know that you want all of the drills plated. Filled is not the same as a plated via.
A filled via is usually filled with a thermally and electrically conductive substance to help pull heat out from internal layers or improve current carrying capacity.
If your application calls for it, you can request filled vias from your manufacturer but it does increase the cost of the board so make sure you need it.
Let me know if there's anything else I can do for you.
Best Regards,
Jorge Garcia
Product Support Specialist for Fusion 360 and EAGLE
Kudos are much appreciated if the information I have shared is helpful to you and/or others.
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