I think there's a bug but I don't think it's the bug you think it is. If you look at the model from which your drawing is derived, and you make the threads 'Modeled', you'll see that the thread doesn't actually penetrate through the chamfer. In which case you shouldn't see any part of the thread in the drawing. See screenshot of the model with 'Modeled' threads below:

You need to:
- Move the timeline marker to before the threads.
- Delete the chamfers from the model.
- Move the timeline marker to after the threads.
- Apply chamfers to the holes.
- Change the threads to 'Modeled'.

I could be mistaken but I think the bug is that the drawing is showing a thread when it shouldn't, rather than the other way around.
Here's a screenshot of the drawing view after modifying the model:

There are a few dims etc. that will need reassociating.
Hope that helps.
EDIT:
I realised that you might not want the threads to be modeled so I switched them to cosmetic. This resulted in the following, which isn't correct either:

I then noticed that your original drawing shows a discrepancy between the two holes in the section view:

I put this down to one of the holes being 'Full Length' and the other not. So there is something not quite right going on.
If this answers your question please mark the thread as solved as it can help others find solutions in the future.
Marcus Wakefield
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I've created a Windows application (and now Mac as well) for creating custom thread files for Fusion. You can find out about it here. Hope you find it useful.
If you need to know how to offset threads for 3D printing then I've created a guide here which you might find useful.
If you would like to send me a tip for any help I've provided or for any of my software applications you've found useful, you can do this via my Ko-Fi page here.
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