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That sounds like you may just need to use Documents.OpenWithOptions method, instead of the Documents.Open method.  Then, just before you call that method to run, you create a new NameValueMap object, and make sure you add an entry into it with the Name = "SkipAllUnresolvedFiles", and the Value = True.  Then supply that NameValueMap as the second (of 3) input being requested by the method.

Wesley Crihfield

EESignature

(Not an Autodesk Employee)