Hi cwinches,
Great question.
Non-manifold edges or watertight issues simply mean that the model is not built out of closed solids, and is instead a disjointed series of faces (FormIt doesn't know which faces are part of which solids). This can happen easily if you're used to face-by-face modeling, like in SketchUp.
My recommendation is to always work with closed solids in FormIt, meaning if you start with a simple surface, always extrude it to make it a solid and go from there. Then you can use advanced tools like Shell Solid, Offset solid, Boolean, etc. Also pushing/pulling faces works really well with solids as it can clean itself up better than SketchUp when dragging faces that modify the volume. FormIt definitely works best when everything in the model is solid - and it helps immensely when moving the data downstream like converting to Revit or exporting for 3D printing. You can also Group individual solids to make sure they don't interfere with each other.
In your image, I would recommend making the outer volume (white) one solid, and then making each plane of glass (grey) its own extruded volume (take the surface and extrude it 1/4" or whatever). For the white volume, you could make a large simple volume with the pitched roof, and use the Shell Solid function in the Advanced Modeling Toolbar at the top to add thickness to the top, sides, and bottom. You can do this by launching the Shell Solid tool, then selecting the front face (it will shell everything else and remove this face), to get the volume I see in your image. Then, because it's solid, you can simply drag the side wall to eliminate it as well, but still keep the rest of the white volume solid.
You should end up with no red non-manifold lines if you have that diagnostic option turned on. Moving forward, your model will perform much better!
Hope this helps, and feel free to reach out here or via DM if you want me to take a stab at fixing your model.
Josh Goldstein
Senior Product Manager