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The new Palette API looks great - being able to display HTML is a feature I've been waiting for! I was just wondering if the JS running in the palette has access to the Adsk API as well? Or can connect a Palette to script that's already running?
Did you see the overview of the palette functionality in the API help?
http://help.autodesk.com/view/fusion360/ENU/?guid=GUID-6C0C8148-98D0-4DBC-A4EC-D8E03A8A3B5B
You cannot use the Fusion API from the JavaScript associated with the html. However you can communicate between the JavaScript and your add-in, so the JavaScript can pass information to the add-in and then the add-in can make API calls.