RMB
>I have a derived part which is based in an assembly.
Based in an assembly or derived from an assembly?
Maybe I misunderstand the question. If you want to derive a part you can do it from the part file rather than the assembly. If you want to combine a couple of parts in the assembly but not all you can click the +/- options to include or exclude. You also have the option to cut or intersection.
Can you zip and post the files?
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