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FBXExportFileVersion FBX201000;
// This version of the command has been deprecated and will be removed in the next release.
FBXExporterSetParam "FileVersion" "FBX201000"
I ran into a somewhat similar issue as we move from Maya 2012 to 2014 and the fix was just to a '-v' flag.
FBXExportFileVersion -v FBX201000;
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