The first place to look is in Vault under Tools>Vault Settings> Visualization Tab> Publish options. If this doesn't have what you need, e.g. printing in monochrome, you can modify the .PC3 file within TrueView. To do this: Open any DWG in TrueView and go to Plot. Select DWF6 ePlot.PC3 under Printer/Plotter. Click Properties to open the .PC3 editor. You can make any changes here. For example: to change to Monochrome printing, expand the graphics node, select Vector Graphics and change the option to Monochrome. Click OK to save. The job processor should now publish DWFs with these settings.
Once you have a PC3 file that meets your needs you can copy the file to any machine that needs the same settings. The file should be located in: %USERPROFILE%\AppData\Roaming\Autodesk\DWG TrueView 2011\R8\enu\Plotters\ (Win 7). Just copy the file from this location to the same location on a new machine/user profile.
Not sure if this is the best way, but it worked for me.
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