"Best Practices for Implementing Autodesk Vault" says that "You can upgrade MSDE to full SQL Server at any time."
Does it mean that it is just a matter of licensing? Or, will I have to perform some tedious job like baking up all data, installing full SQL Server, migrating data to new installation, testing database, etc??
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You simply upgrade the instance with one of the supported versions of SQL - see the README for the particular version of vault to see which versions are supported.
See the Advanced Configuration Guide for details.
Of course I highly recommend doing a backup with the ADMS Console prior to doing any kind of upgrade, but the upgrade process generally will not involve restored the backup unless something goes very wrong.
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