please refer to post by Dave Mink on 21-05-2013 http://forums.autodesk.com/t5/Vault-General/Refere
Hope it helps
In addition, the reference repair utility needs to be ran from a Vault Client.
Also, with the tighten rules that we implemented for purging, the RRU tool will/should not be used as a regular clean-up task anymore...
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